PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Home  BLAST  Prediction  RegMap  ATRM  Download  Help  About  Links
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_07148.1_g00005.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C3H
Protein Properties Length: 350aa    MW: 38939.8 Da    PI: 7.0351
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_07148.1_g00005.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH231.4e-077499127
                             --S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                             ykt+ C  f   G C+ G+ C+FaHg+
  Rsa1.0_07148.1_g00005.1 74 YKTRMCVKFKS-GACRNGELCNFAHGM 99
                             89999**9999.*************95 PP
2zf-CCCH18.73.1e-061621761125
                              GTS.--TTTTT-SS-S CS
                  zf-CCCH  11 rtG.tCkyGdrCkFaH 25 
                                G +C+yGdrC+F+H
  Rsa1.0_07148.1_g00005.1 162 F-GeECPYGDRCNFIH 176
                              5.449*********** PP
3zf-CCCH37.93e-12241266127
                              --S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                              +kt+lC  f + G+C++Gd+C+FaHg+
  Rsa1.0_07148.1_g00005.1 241 WKTRLCGKFEK-GQCPFGDNCHFAHGQ 266
                              8**********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.7E-1471106IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.77E-872104IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-47399IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.43673100IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-47499IPR000571Zinc finger, CCCH-type
SMARTSM003560.0036151178IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.2E-6151177IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.455151179IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-8153177IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-8238269IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-14238269IPR000571Zinc finger, CCCH-type
SMARTSM003562.9E-7240266IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.713240267IPR000571Zinc finger, CCCH-type
PfamPF006428.2E-10241266IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MDSSYSDSRP YVVWNQTQMV DSTNNELSES QTMPQLKRPR LAADDNNNTS WGMVPSSNPP  60
PPPPMNKGTA NIFYKTRMCV KFKSGACRNG ELCNFAHGME DLRQPPSNWQ EIVGPPVQDR  120
EKDRERERER ERLSSVSSAG DSNWEDDQKI ILRMKLCRKF CFGEECPYGD RCNFIHEDLS  180
KFREENGKLR ESLAISVVDP MSVENGVAAS HQVEVNRQGG IPVPAAPMIN GGGGGVKTVF  240
WKTRLCGKFE KGQCPFGDNC HFAHGQAELL QHSVGRVEGE AMNAVAAASV SKQTVVPANE  300
PFAMKPIAQV TADSSGLNDE GRRKKCLLKW SDSKKINRIY GDWIDDLPVG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013625473.10.0PREDICTED: zinc finger CCCH domain-containing protein 39-like
SwissprotQ9LT811e-165C3H39_ARATH; Zinc finger CCCH domain-containing protein 39
TrEMBLA0A0D3BC600.0A0A0D3BC60_BRAOL; Uncharacterized protein
STRINGBra001745.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM100662536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.11e-160C3H family protein